IL_6LQQ_074

3D structure

PDB id

6LQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGAG*CAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQQ_074 not in the Motif Atlas

Homologous match to IL_4V88_471

Geometric discrepancy: 0.3141

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6LQQ|1|SA|U|1669
6LQQ|1|SA|G|1670
6LQQ|1|SA|A|1671
6LQQ|1|SA|G|1672
*
6LQQ|1|SA|C|1729
6LQQ|1|SA|A|1730
6LQQ|1|SA|A|1731
6LQQ|1|SA|A|1732

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain B3

U3 small nucleolar RNA-associated protein 13