IL_6LQQ_077

3D structure

PDB id

6LQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AAG*CAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQQ_077 not in the Motif Atlas

Geometric match to IL_3NJ7_004

Geometric discrepancy: 0.2649

The information below is about IL_3NJ7_004

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

6LQQ|1|SA|A|1693
6LQQ|1|SA|A|1694
6LQQ|1|SA|G|1695
*
6LQQ|1|SA|C|1706
6LQQ|1|SA|A|1707
6LQQ|1|SA|U|1708

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RE

U3 small nucleolar RNA-associated protein 22