IL_6LQR_020
3D structure
- PDB id
- 6LQR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.6 Å
Loop
- Sequence
- GUAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 6LQR|1|SA|U|170
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LQR_020 not in the Motif Atlas
- Homologous match to IL_4V88_394
- Geometric discrepancy: 0.1629
- The information below is about IL_4V88_394
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
6LQR|1|SA|G|143
6LQR|1|SA|U|144
6LQR|1|SA|A|145
6LQR|1|SA|U|146
6LQR|1|SA|A|147
6LQR|1|SA|A|148
6LQR|1|SA|C|149
*
6LQR|1|SA|G|165
6LQR|1|SA|C|166
6LQR|1|SA|U|167
6LQR|1|SA|A|168
6LQR|1|SA|A|169
6LQR|1|SA|U|170
6LQR|1|SA|A|171
6LQR|1|SA|C|172
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain RA
- Ribosome biogenesis protein ENP2
- Chain RP
- U3 small nucleolar RNA-associated protein 20
- Chain SH
- 40S ribosomal protein S6-A
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