IL_6LQS_008

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AG*CGU

Length

5 nucleotides

Bulged bases

6LQS|1|5A|G|63

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQS_008 not in the Motif Atlas

Geometric match to IL_3NDB_004

Geometric discrepancy: 0.2697

The information below is about IL_3NDB_004

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

6LQS|1|5A|A|17
6LQS|1|5A|G|18
*
6LQS|1|5A|C|62
6LQS|1|5A|G|63
6LQS|1|5A|U|64

Current chains

Chain 5A

5' ETS

Nearby chains

Chain AG

NET1-associated nuclear protein 1