IL_6LQS_010
3D structure
- PDB id
- 6LQS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAG*CAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LQS_010 not in the Motif Atlas
- Geometric match to IL_3TD0_002
- Geometric discrepancy: 0.2983
- The information below is about IL_3TD0_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
6LQS|1|5A|C|550
6LQS|1|5A|A|551
6LQS|1|5A|G|552
*
6LQS|1|5A|C|585
6LQS|1|5A|A|586
6LQS|1|5A|G|587
Current chains
- Chain 5A
- 5' ETS
Nearby chains
- Chain 5J
- rRNA-processing protein FCF2
- Chain B6
- U3 small nucleolar RNA-associated protein 6
- Chain M4
- ATP-dependent RNA helicase DOB1
- Chain RQ
- U3 small nucleolar RNA-associated protein 14
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