IL_6LQS_015
3D structure
- PDB id
- 6LQS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UAUAAG*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 6LQS|1|SA|U|66, 6LQS|1|SA|A|68
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LQS_015 not in the Motif Atlas
- Homologous match to IL_4V88_390
- Geometric discrepancy: 0.1602
- The information below is about IL_4V88_390
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87517.1
- Basepair signature
- cWW-L-R-L-R-tHS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6LQS|1|SA|U|64
6LQS|1|SA|A|65
6LQS|1|SA|U|66
6LQS|1|SA|A|67
6LQS|1|SA|A|68
6LQS|1|SA|G|69
*
6LQS|1|SA|U|82
6LQS|1|SA|G|83
6LQS|1|SA|A|84
6LQS|1|SA|A|85
6LQS|1|SA|A|86
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain RP
- U3 small nucleolar RNA-associated protein 20
- Chain SH
- 40S ribosomal protein S6-A
- Chain SZ
- 40S ribosomal protein S24-A
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