IL_6LQS_032

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAU*AAUU

Length

7 nucleotides

Bulged bases

6LQS|1|SA|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQS_032 not in the Motif Atlas

Geometric match to IL_6F4H_001

Geometric discrepancy: 0.27

The information below is about IL_6F4H_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

6LQS|1|SA|G|480
6LQS|1|SA|A|481
6LQS|1|SA|U|482
*
6LQS|1|SA|A|505
6LQS|1|SA|A|506
6LQS|1|SA|U|507
6LQS|1|SA|U|508

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain 5H

Something about silencing protein 10

Chain SK

40S ribosomal protein S9-A