IL_6LQS_047

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGAC*GUUUUC

Length

11 nucleotides

Bulged bases

6LQS|1|SA|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQS_047 not in the Motif Atlas

Geometric match to IL_4V88_422

Geometric discrepancy: 0.3789

The information below is about IL_4V88_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6LQS|1|SA|G|866
6LQS|1|SA|G|867
6LQS|1|SA|G|868
6LQS|1|SA|A|869
6LQS|1|SA|C|870
*
6LQS|1|SA|G|957
6LQS|1|SA|U|958
6LQS|1|SA|U|959
6LQS|1|SA|U|960
6LQS|1|SA|U|961
6LQS|1|SA|C|962

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RF

Ribosomal RNA-processing protein 7

Chain SO

40S ribosomal protein S13

Chain Sc

40S ribosomal protein S27-A