IL_6LQS_053

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQS_053 not in the Motif Atlas

Geometric match to IL_4C7O_002

Geometric discrepancy: 0.2999

The information below is about IL_4C7O_002

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

6LQS|1|SA|G|1051
6LQS|1|SA|U|1052
6LQS|1|SA|G|1053
*
6LQS|1|SA|C|1066
6LQS|1|SA|C|1067

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain 5I

Protein SOF1

Chain RF

Ribosomal RNA-processing protein 7

Chain SC

40S ribosomal protein S1-A

Chain Sc

40S ribosomal protein S27-A