IL_6LQS_072

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UA*UAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQS_072 not in the Motif Atlas

Homologous match to IL_8C3A_501

Geometric discrepancy: 0.2249

The information below is about IL_8C3A_501

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58310.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

6LQS|1|SA|U|517
6LQS|1|SA|A|518
*
6LQS|1|SA|U|533
6LQS|1|SA|A|534
6LQS|1|SA|A|535

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RJ

Ribosome biogenesis protein BMS1

Chain SK

40S ribosomal protein S9-A

Chain SZ

40S ribosomal protein S24-A