IL_6LQU_012

3D structure

PDB id

6LQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UG*CUG

Length

5 nucleotides

Bulged bases

6LQU|1|5A|U|129

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQU_012 not in the Motif Atlas

Geometric match to IL_4V88_469

Geometric discrepancy: 0.3256

The information below is about IL_4V88_469

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6LQU|1|5A|U|116
6LQU|1|5A|G|117
*
6LQU|1|5A|C|128
6LQU|1|5A|U|129
6LQU|1|5A|G|130

Current chains

Chain 5A

5' ETS

Nearby chains

Chain RO

Nucleolar complex protein 4