IL_6LQU_018
3D structure
- PDB id
- 6LQU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GC*GCGAUU
- Length
- 8 nucleotides
- Bulged bases
- 6LQU|1|5A|G|259, 6LQU|1|5A|U|261
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LQU_018 not in the Motif Atlas
- Geometric match to IL_1R3E_002
- Geometric discrepancy: 0.2968
- The information below is about IL_1R3E_002
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_84476.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
6LQU|1|5A|G|250
6LQU|1|5A|C|251
*
6LQU|1|5A|G|257
6LQU|1|5A|C|258
6LQU|1|5A|G|259
6LQU|1|5A|A|260
6LQU|1|5A|U|261
6LQU|1|5A|U|262
Current chains
- Chain 5A
- 5' ETS
Nearby chains
- Chain 3E
- Nucleolar protein 58
- Chain 5D
- U3 small nucleolar RNA-associated protein 11
- Chain RI
- Ribosome biogenesis protein UTP30
- Chain RJ
- Ribosome biogenesis protein BMS1
- Chain RW
- Regulator of rDNA transcription protein 14
- Chain SA
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: