IL_6LQU_051

3D structure

PDB id

6LQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCAAU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQU_051 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.1371

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

6LQU|1|SA|C|443
6LQU|1|SA|C|444
6LQU|1|SA|A|445
6LQU|1|SA|A|446
6LQU|1|SA|U|447
*
6LQU|1|SA|A|460
6LQU|1|SA|G|461

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RB

U3 small nucleolar ribonucleoprotein protein LCP5

Chain SF

40S ribosomal protein S4-A

Chain SZ

40S ribosomal protein S24-A