IL_6LQU_068

3D structure

PDB id

6LQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQU_068 not in the Motif Atlas

Geometric match to IL_6CZR_145

Geometric discrepancy: 0.1861

The information below is about IL_6CZR_145

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.6

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6LQU|1|SA|C|990
6LQU|1|SA|G|991
6LQU|1|SA|A|992
6LQU|1|SA|A|993
6LQU|1|SA|G|994
*
6LQU|1|SA|C|1010
6LQU|1|SA|G|1011
6LQU|1|SA|U|1012
6LQU|1|SA|A|1013
6LQU|1|SA|G|1014

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RD

rRNA biogenesis protein RRP5