IL_6LQU_083

3D structure

PDB id

6LQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQU_083 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.2983

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6LQU|1|SA|A|1678
6LQU|1|SA|G|1679
6LQU|1|SA|G|1680
6LQU|1|SA|A|1681
6LQU|1|SA|U|1682
*
6LQU|1|SA|A|1719
6LQU|1|SA|G|1720
6LQU|1|SA|A|1721
6LQU|1|SA|A|1722
6LQU|1|SA|U|1723

Current chains

Chain SA

18S pre-rRNA

Nearby chains