IL_6LSR_025

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GGCCCGGC*GUCC

Length

12 nucleotides

Bulged bases

6LSR|1|2|C|502, 6LSR|1|2|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSR_025 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.3651

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6LSR|1|2|G|499
6LSR|1|2|G|500
6LSR|1|2|C|501
6LSR|1|2|C|502
6LSR|1|2|C|503
6LSR|1|2|G|504
6LSR|1|2|G|505
6LSR|1|2|C|506
*
6LSR|1|2|G|652
6LSR|1|2|U|653
6LSR|1|2|C|654
6LSR|1|2|C|655

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain L

60S ribosomal protein L27a

Chain Z

60S ribosomal protein L18