IL_6LSR_064

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GCC*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSR_064 not in the Motif Atlas

Geometric match to IL_4V88_453

Geometric discrepancy: 0.2444

The information below is about IL_4V88_453

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

6LSR|1|2|G|1761
6LSR|1|2|C|1762
6LSR|1|2|C|1763
*
6LSR|1|2|G|1769
6LSR|1|2|A|1770
6LSR|1|2|U|1771

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 3

60S ribosomal export protein NMD3

Chain A

60S ribosomal protein L10a