IL_6LSR_066

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

AC(B8H)U*AACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B8H

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSR_066 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2336

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6LSR|1|2|A|1858
6LSR|1|2|C|1859
6LSR|1|2|B8H|1860
6LSR|1|2|U|1861
*
6LSR|1|2|A|1873
6LSR|1|2|A|1874
6LSR|1|2|C|1875
6LSR|1|2|U|1876

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain C

60S ribosomal protein L29

Chain w

60S ribosomal protein L7