IL_6LSR_098

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6LSR|1|2|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSR_098 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.1096

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

6LSR|1|2|C|2867
6LSR|1|2|G|2868
6LSR|1|2|U|2869
6LSR|1|2|A|2870
6LSR|1|2|A|2871
6LSR|1|2|C|2872
*
6LSR|1|2|G|2877
6LSR|1|2|G|2878
6LSR|1|2|A|2879
6LSR|1|2|U|2880
6LSR|1|2|A|2881
6LSR|1|2|A|2882
6LSR|1|2|G|2883

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 1

Large subunit GTPase 1 homolog

Chain X

60S ribosomal protein L37a