IL_6LSR_110

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GC(B8K)G*U(M7A)C

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B8K, M7A

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSR_110 not in the Motif Atlas

Homologous match to IL_8P9A_319

Geometric discrepancy: 0.1033

The information below is about IL_8P9A_319

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

6LSR|1|2|G|3895
6LSR|1|2|C|3896
6LSR|1|2|B8K|3897
6LSR|1|2|G|3898
*
6LSR|1|2|U|4563
6LSR|1|2|M7A|4564
6LSR|1|2|C|4565

Current chains

Chain 2

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain V

60S ribosomal protein L13a