IL_6LSR_172

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CGGUAA*UAAAU(E7G)

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: E7G

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSR|1|2|C|1732
6LSR|1|2|G|1733
6LSR|1|2|G|1734
6LSR|1|2|U|1735
6LSR|1|2|A|1736
6LSR|1|2|A|1737
*
6LSR|1|2|U|1792
6LSR|1|2|A|1793
6LSR|1|2|A|1794
6LSR|1|2|A|1795
6LSR|1|2|U|1796
6LSR|1|2|E7G|1797

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain c

60S ribosomal protein L21

Chain w

60S ribosomal protein L7