IL_6LSR_174
3D structure
- PDB id
- 6LSR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- UUAA(P7G)*CCAUA
- Length
- 10 nucleotides
- Bulged bases
- 6LSR|1|2|U|2070
- QA status
- Modified nucleotides: P7G
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LSR_174 not in the Motif Atlas
- Homologous match to IL_8C3A_051
- Geometric discrepancy: 0.108
- The information below is about IL_8C3A_051
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
6LSR|1|2|U|1905
6LSR|1|2|U|1906
6LSR|1|2|A|1907
6LSR|1|2|A|1908
6LSR|1|2|P7G|1909
*
6LSR|1|2|C|2067
6LSR|1|2|C|2068
6LSR|1|2|A|2069
6LSR|1|2|U|2070
6LSR|1|2|A|2071
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 5
- 5S ribosomal RNA; 5S rRNA
- Chain Z
- 60S ribosomal protein L18
- Chain t
- 60S ribosomal protein L32
- Chain u
- 60S ribosomal protein L35a
- Chain w
- 60S ribosomal protein L7
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