IL_6LSR_178

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*CGCG

Length

16 nucleotides

Bulged bases

6LSR|1|2|A2M|3785, 6LSR|1|2|C|3791, 6LSR|1|2|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSR_178 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.0952

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6LSR|1|2|C|3781
6LSR|1|2|5MC|3782
6LSR|1|2|A|3783
6LSR|1|2|A|3784
6LSR|1|2|A2M|3785
6LSR|1|2|U|3786
6LSR|1|2|G|3787
6LSR|1|2|C|3788
6LSR|1|2|C|3789
6LSR|1|2|U|3790
6LSR|1|2|C|3791
6LSR|1|2|OMG|3792
*
6LSR|1|2|C|3808
6LSR|1|2|G|3809
6LSR|1|2|C|3810
6LSR|1|2|G|3811

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 1

Large subunit GTPase 1 homolog

Chain 3

60S ribosomal export protein NMD3