IL_6LSS_033

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

6LSS|1|2|G|748, 6LSS|1|2|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSS_033 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.2058

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6LSS|1|2|G|745
6LSS|1|2|A|746
6LSS|1|2|A|747
6LSS|1|2|G|748
6LSS|1|2|G|749
6LSS|1|2|U|750
6LSS|1|2|G|751
6LSS|1|2|G|752
*
6LSS|1|2|U|911
6LSS|1|2|G|912
6LSS|1|2|U|913
6LSS|1|2|U|914
6LSS|1|2|A|915
6LSS|1|2|C|916
6LSS|1|2|A|917
6LSS|1|2|G|918
6LSS|1|2|C|919

Current chains

Chain 2

28S rRNA

Nearby chains

Chain R

Translation machinery-associated protein 16

Chain S

60S ribosomal protein L14

Chain b

60S ribosomal protein L18a