IL_6LSS_067
3D structure
- PDB id
- 6LSS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state preA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- CGCCCGAU*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LSS_067 not in the Motif Atlas
- Homologous match to IL_8C3A_052
- Geometric discrepancy: 0.1392
- The information below is about IL_8C3A_052
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
6LSS|1|2|C|1911
6LSS|1|2|G|1912
6LSS|1|2|C|1913
6LSS|1|2|C|1914
6LSS|1|2|C|1915
6LSS|1|2|G|1916
6LSS|1|2|A|1917
6LSS|1|2|U|1918
*
6LSS|1|2|G|2064
6LSS|1|2|G|2065
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain V
- 60S ribosomal protein L13a
- Chain b
- 60S ribosomal protein L18a
- Chain n
- 60S ribosomal protein L35a
- Chain p
- 60S ribosomal protein L7
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