IL_8C3A_052

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGCCGGAA*UA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_84902.1

Basepair signature

cWW-L-cWW-L-L-R-cHH

Number of instances in this motif group

2

Unit IDs

8C3A|1|1|U|1169
8C3A|1|1|G|1170
8C3A|1|1|C|1171
8C3A|1|1|C|1172
8C3A|1|1|G|1173
8C3A|1|1|G|1174
8C3A|1|1|A|1175
8C3A|1|1|A|1176
*
8C3A|1|1|U|1321
8C3A|1|1|A|1322

Current chains

Chain 1

25S

Nearby chains

Chain 0

60S ribosomal protein L20

Chain AG

60S ribosomal protein L33-A

Chain o

60S ribosomal protein L7-A

Chain w

Ribosomal protein L13