IL_6LSS_073

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

6LSS|1|2|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSS_073 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.2208

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6LSS|1|2|U|1957
6LSS|1|2|A|1958
6LSS|1|2|U|1959
6LSS|1|2|A|1960
6LSS|1|2|G|1961
6LSS|1|2|A|1962
6LSS|1|2|C|1963
6LSS|1|2|A|1964
6LSS|1|2|G|1965
*
6LSS|1|2|C|2022
6LSS|1|2|C|2023
6LSS|1|2|G|2024
6LSS|1|2|A|2025
6LSS|1|2|A|2026

Current chains

Chain 2

28S rRNA

Nearby chains

Chain R

Translation machinery-associated protein 16