IL_6LSS_152

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GCA*UC

Length

5 nucleotides

Bulged bases

6LSS|1|2|C|5013

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSS_152 not in the Motif Atlas

Geometric match to IL_5J7L_276

Geometric discrepancy: 0.2897

The information below is about IL_5J7L_276

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

6LSS|1|2|G|5012
6LSS|1|2|C|5013
6LSS|1|2|A|5014
*
6LSS|1|2|U|5035
6LSS|1|2|C|5036

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 7

Probable ribosome biogenesis protein RLP24

Chain 9

Zinc finger protein 593