IL_6LSS_171

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSS_171 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.1125

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6LSS|1|2|G|2358
6LSS|1|2|U|2359
6LSS|1|2|A|2360
6LSS|1|2|G|2361
6LSS|1|2|U|2362
6LSS|1|2|A2M|2363
6LSS|1|2|OMG|2364
*
6LSS|1|2|C|3858
6LSS|1|2|G|3859
6LSS|1|2|A|3860
6LSS|1|2|A|3861
6LSS|1|2|A|3862
6LSS|1|2|C|3863

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

Nucleolar GTP-binding protein 1

Chain D

60S ribosomal protein L4

Chain Y

60S ribosomal protein L17