IL_6LSS_179
3D structure
- PDB id
- 6LSS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state preA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- UGUA(PSU)(OMG)*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- 6LSS|1|2|U|4634, 6LSS|1|2|PSU|4636
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LSS_179 not in the Motif Atlas
- Homologous match to IL_8C3A_127
- Geometric discrepancy: 0.4435
- The information below is about IL_8C3A_127
- Detailed Annotation
- UAA/GAN related
- Broad Annotation
- UAA/GAN related
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6LSS|1|2|U|4632
6LSS|1|2|G|4633
6LSS|1|2|U|4634
6LSS|1|2|A|4635
6LSS|1|2|PSU|4636
6LSS|1|2|OMG|4637
*
6LSS|1|2|C|4662
6LSS|1|2|G|4663
6LSS|1|2|A|4664
6LSS|1|2|A|4665
6LSS|1|2|G|4666
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 7
- Probable ribosome biogenesis protein RLP24
- Chain 9
- Zinc finger protein 593
- Chain B
- 60S ribosomal protein L3
- Chain j
- 60S ribosomal protein L31
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