IL_6LU8_023

3D structure

PDB id

6LU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-60S ribosomal subunit - state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

6LU8|1|2|G|483, 6LU8|1|2|U|484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LU8_023 not in the Motif Atlas

Geometric match to IL_4V88_392

Geometric discrepancy: 0.2231

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6LU8|1|2|G|482
6LU8|1|2|G|483
6LU8|1|2|U|484
6LU8|1|2|C|485
*
6LU8|1|2|G|671
6LU8|1|2|C|672

Current chains

Chain 2

28S rRNA

Nearby chains