IL_6LU8_035

3D structure

PDB id

6LU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-60S ribosomal subunit - state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

6LU8|1|2|G|748, 6LU8|1|2|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LU8_035 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1898

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6LU8|1|2|G|745
6LU8|1|2|A|746
6LU8|1|2|A|747
6LU8|1|2|G|748
6LU8|1|2|G|749
6LU8|1|2|U|750
6LU8|1|2|G|751
6LU8|1|2|G|752
*
6LU8|1|2|U|911
6LU8|1|2|G|912
6LU8|1|2|U|913
6LU8|1|2|U|914
6LU8|1|2|A|915
6LU8|1|2|C|916
6LU8|1|2|A|917
6LU8|1|2|G|918
6LU8|1|2|C|919

Current chains

Chain 2

28S rRNA

Nearby chains

Chain R

Translation machinery-associated protein 16

Chain S

60S ribosomal protein L14

Chain b

60S ribosomal protein L18a