IL_6LU8_075

3D structure

PDB id

6LU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-60S ribosomal subunit - state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

6LU8|1|2|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LU8_075 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.2264

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6LU8|1|2|U|1957
6LU8|1|2|A|1958
6LU8|1|2|U|1959
6LU8|1|2|A|1960
6LU8|1|2|G|1961
6LU8|1|2|A|1962
6LU8|1|2|C|1963
6LU8|1|2|A|1964
6LU8|1|2|G|1965
*
6LU8|1|2|C|2022
6LU8|1|2|C|2023
6LU8|1|2|G|2024
6LU8|1|2|A|2025
6LU8|1|2|A|2026

Current chains

Chain 2

28S rRNA

Nearby chains

Chain R

Translation machinery-associated protein 16

Chain b

60S ribosomal protein L18a