IL_6LU8_134
3D structure
- PDB id
- 6LU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a human pre-60S ribosomal subunit - state A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- C(UR3)CAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: UR3
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LU8_134 not in the Motif Atlas
- Homologous match to IL_8C3A_125
- Geometric discrepancy: 0.1573
- The information below is about IL_8C3A_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6LU8|1|2|C|4596
6LU8|1|2|UR3|4597
6LU8|1|2|C|4598
6LU8|1|2|A|4599
6LU8|1|2|G|4600
6LU8|1|2|U|4601
6LU8|1|2|A|4602
6LU8|1|2|C|4603
*
6LU8|1|2|G|4608
6LU8|1|2|G|4609
6LU8|1|2|A|4610
6LU8|1|2|A|4611
6LU8|1|2|C|4612
6LU8|1|2|C|4613
6LU8|1|2|G|4614
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 4
- Nucleolar GTP-binding protein 1
- Chain 6
- Eukaryotic translation initiation factor 6
- Chain B
- 60S ribosomal protein L3
- Chain I
- 60S ribosomal protein L9
- Chain e
- 60S ribosomal protein L23
- Chain z
- Protein LLP homolog
Coloring options: