IL_6M62_039
3D structure
- PDB id
- 6M62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUAAG*CUAUA
- Length
- 10 nucleotides
- Bulged bases
- 6M62|1|1|U|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6M62_039 not in the Motif Atlas
- Homologous match to IL_8C3A_051
- Geometric discrepancy: 0.0842
- The information below is about IL_8C3A_051
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
6M62|1|1|U|1167
6M62|1|1|U|1168
6M62|1|1|A|1169
6M62|1|1|A|1170
6M62|1|1|G|1171
*
6M62|1|1|C|1328
6M62|1|1|U|1329
6M62|1|1|A|1330
6M62|1|1|U|1331
6M62|1|1|A|1332
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L7-A
- Chain e
- 60S ribosomal protein L32
- Chain f
- 60S ribosomal protein L33-A
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