IL_6M62_056
3D structure
- PDB id
- 6M62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGA*UUUUC
- Length
- 8 nucleotides
- Bulged bases
- 6M62|1|1|U|1821
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6M62_056 not in the Motif Atlas
- Geometric match to IL_5ML7_010
- Geometric discrepancy: 0.2574
- The information below is about IL_5ML7_010
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
6M62|1|1|G|1623
6M62|1|1|G|1624
6M62|1|1|A|1625
*
6M62|1|1|U|1818
6M62|1|1|U|1819
6M62|1|1|U|1820
6M62|1|1|U|1821
6M62|1|1|C|1822
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain g
- 60S ribosomal protein L34-A
- Chain k
- 60S ribosomal protein L38
- Chain n
- Pescadillo homolog
- Chain q
- Ribosome biogenesis protein NOP53
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