IL_6M62_057
3D structure
- PDB id
- 6M62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UCUUC*GGAAUA
- Length
- 11 nucleotides
- Bulged bases
- 6M62|1|1|U|1629
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6M62_057 not in the Motif Atlas
- Homologous match to IL_5TBW_066
- Geometric discrepancy: 0.3497
- The information below is about IL_5TBW_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_48431.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6M62|1|1|U|1627
6M62|1|1|C|1628
6M62|1|1|U|1629
6M62|1|1|U|1630
6M62|1|1|C|1631
*
6M62|1|1|G|1811
6M62|1|1|G|1812
6M62|1|1|A|1813
6M62|1|1|A|1814
6M62|1|1|U|1815
6M62|1|1|A|1816
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain Z
- 60S ribosomal protein L27-A
- Chain n
- Pescadillo homolog
- Chain q
- Ribosome biogenesis protein NOP53
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