IL_6M62_062
3D structure
- PDB id
- 6M62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUAAC*GGAAGA
- Length
- 11 nucleotides
- Bulged bases
- 6M62|1|1|G|1751
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6M62_062 not in the Motif Atlas
- Homologous match to IL_5TBW_071
- Geometric discrepancy: 0.0998
- The information below is about IL_5TBW_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_69313.1
- Basepair signature
- cWW-tWH-tHH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6M62|1|1|U|1694
6M62|1|1|U|1695
6M62|1|1|A|1696
6M62|1|1|A|1697
6M62|1|1|C|1698
*
6M62|1|1|G|1747
6M62|1|1|G|1748
6M62|1|1|A|1749
6M62|1|1|A|1750
6M62|1|1|G|1751
6M62|1|1|A|1752
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain g
- 60S ribosomal protein L34-A
- Chain k
- 60S ribosomal protein L38
Coloring options: