IL_6M62_069
3D structure
- PDB id
- 6M62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 6M62|1|1|U|1931
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6M62_069 not in the Motif Atlas
- Geometric match to IL_4V9F_063
- Geometric discrepancy: 0.0801
- The information below is about IL_4V9F_063
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_47346.2
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
6M62|1|1|C|1918
6M62|1|1|G|1919
6M62|1|1|U|1920
6M62|1|1|A|1921
6M62|1|1|A|1922
6M62|1|1|C|1923
*
6M62|1|1|G|1928
6M62|1|1|G|1929
6M62|1|1|A|1930
6M62|1|1|U|1931
6M62|1|1|A|1932
6M62|1|1|A|1933
6M62|1|1|G|1934
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain I
- Bud site selection protein 20
- Chain R
- 60S ribosomal protein L19-A
- Chain m
- Nucleolar GTP-binding protein 2
- Chain p
- 60S ribosomal protein L43-A
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