IL_6M62_074
3D structure
- PDB id
- 6M62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAUGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 6M62|1|1|U|2159, 6M62|1|1|U|2175, 6M62|1|1|C|2179
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6M62_074 not in the Motif Atlas
- Homologous match to IL_5TBW_083
- Geometric discrepancy: 0.1367
- The information below is about IL_5TBW_083
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6M62|1|1|C|2156
6M62|1|1|G|2157
6M62|1|1|A|2158
6M62|1|1|U|2159
6M62|1|1|G|2160
6M62|1|1|G|2161
*
6M62|1|1|U|2173
6M62|1|1|G|2174
6M62|1|1|U|2175
6M62|1|1|U|2176
6M62|1|1|G|2177
6M62|1|1|A|2178
6M62|1|1|C|2179
6M62|1|1|G|2180
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain p
- 60S ribosomal protein L43-A
Coloring options: