IL_6M62_113

3D structure

PDB id

6M62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGCC*GUUGUU

Length

10 nucleotides

Bulged bases

6M62|1|1|U|3354, 6M62|1|1|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6M62_113 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.3035

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6M62|1|1|A|3347
6M62|1|1|G|3348
6M62|1|1|C|3349
6M62|1|1|C|3350
*
6M62|1|1|G|3353
6M62|1|1|U|3354
6M62|1|1|U|3355
6M62|1|1|G|3356
6M62|1|1|U|3357
6M62|1|1|U|3358

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains