IL_6M62_125

3D structure

PDB id

6M62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAU*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6M62_125 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.1583

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6M62|1|1|G|1618
6M62|1|1|A|1619
6M62|1|1|U|1620
*
6M62|1|1|G|1825
6M62|1|1|C|1826

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain 2

5.8S ribosomal RNA; 5.8S rRNA

Chain k

60S ribosomal protein L38

Chain n

Pescadillo homolog