IL_6M62_132
3D structure
- PDB id
- 6M62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UCUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 6M62|1|1|A|1221
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6M62_132 not in the Motif Atlas
- Homologous match to IL_8CRE_057
- Geometric discrepancy: 0.3186
- The information below is about IL_8CRE_057
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
6M62|1|1|U|1218
6M62|1|1|C|1219
6M62|1|1|U|1220
6M62|1|1|A|1221
6M62|1|1|G|1222
6M62|1|1|A|1223
6M62|1|1|C|1224
6M62|1|1|A|1225
6M62|1|1|G|1226
*
6M62|1|1|C|1283
6M62|1|1|C|1284
6M62|1|1|G|1285
6M62|1|1|A|1286
6M62|1|1|A|1287
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain 5
- rRNA-processing protein CGR1
- Chain S
- 60S ribosomal protein L20-A
- Chain W
- Ribosome assembly factor MRT4
Coloring options: