3D structure

PDB id
6MKN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.46 Å

Loop

Sequence
CCAGC*GG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6MKN_044 not in the Motif Atlas
Geometric match to IL_3MXH_005
Geometric discrepancy: 0.2904
The information below is about IL_3MXH_005
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_15052.4
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
8

Unit IDs

6MKN|1|A|C|1128
6MKN|1|A|C|1129
6MKN|1|A|A|1130
6MKN|1|A|G|1131
6MKN|1|A|C|1132
*
6MKN|1|A|G|1142
6MKN|1|A|G|1143

Current chains

Chain A
16S rRNA

Nearby chains

Chain I
30S ribosomal protein S9

Coloring options:


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