IL_6MPI_019
3D structure
- PDB id
- 6MPI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGU-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.33 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6MPI|1|A|A|532, 6MPI|1|A|U|534
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6MPI_019 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1315
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6MPI|1|A|G|515
6MPI|1|A|U|516
6MPI|1|A|G|517
6MPI|1|A|C|518
6MPI|1|A|C|519
6MPI|1|A|A|520
6MPI|1|A|G|521
*
6MPI|1|A|C|528
6MPI|1|A|G|529
6MPI|1|A|G|530
6MPI|1|A|U|531
6MPI|1|A|A|532
6MPI|1|A|A|533
6MPI|1|A|U|534
6MPI|1|A|A|535
6MPI|1|A|C|536
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain D
- 30S ribosomal protein S4
- Chain L
- 30S ribosomal protein S12
- Chain W
- mRNA A-site fragment
- Chain X
- tRNA ASL Escherichia coli Arg1
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