3D structure

PDB id
6MTB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
U(B8H)GA*UACA
Length
8 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: B8H

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6MTB_134 not in the Motif Atlas
Homologous match to IL_8P9A_327
Geometric discrepancy: 0.2619
The information below is about IL_8P9A_327
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

6MTB|1|5|U|4295
6MTB|1|5|B8H|4296
6MTB|1|5|G|4297
6MTB|1|5|A|4298
*
6MTB|1|5|U|4312
6MTB|1|5|A|4313
6MTB|1|5|C|4314
6MTB|1|5|A|4315

Current chains

Chain 5
28S rRNA

Nearby chains

Chain D
60S ribosomal protein L5
Chain Q
60S ribosomal protein L18
Chain T
60S ribosomal protein L21
Chain b
60S ribosomal protein L29
Chain o
60S ribosomal protein L36a

Coloring options:


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