3D structure

PDB id
8P9A (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with Methyllissoclimide
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
UUGA*UACA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

8P9A|1|AR|U|2718
8P9A|1|AR|U|2719
8P9A|1|AR|G|2720
8P9A|1|AR|A|2721
*
8P9A|1|AR|U|2735
8P9A|1|AR|A|2736
8P9A|1|AR|C|2737
8P9A|1|AR|A|2738

Current chains

Chain AR
25S ribosomal RNA

Nearby chains

Chain CG
60S ribosomal protein L5
Chain CS
60S ribosomal protein L18-A
Chain CV
60S ribosomal protein L21-A
Chain DD
60S ribosomal protein L29
Chain DQ
60S ribosomal protein L42-A

Coloring options:

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