IL_6MTB_193

3D structure

PDB id

6MTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

6MTB|1|9|U|305, 6MTB|1|9|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTB_193 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3878

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

6MTB|1|9|C|216
6MTB|1|9|A|217
6MTB|1|9|U|218
6MTB|1|9|U|219
*
6MTB|1|9|A|302
6MTB|1|9|C|303
6MTB|1|9|C|304
6MTB|1|9|U|305
6MTB|1|9|C|306
6MTB|1|9|G|307
6MTB|1|9|G|308
6MTB|1|9|G|309

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

40S ribosomal protein S4, X isoform

Chain II

40S ribosomal protein S8