IL_6MTB_210

3D structure

PDB id

6MTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

6MTB|1|9|A|628

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTB_210 not in the Motif Atlas

Homologous match to IL_8C3A_425

Geometric discrepancy: 0.3063

The information below is about IL_8C3A_425

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.2

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6MTB|1|9|G|611
6MTB|1|9|PSU|612
6MTB|1|9|G|613
6MTB|1|9|C|614
6MTB|1|9|C|615
6MTB|1|9|A|616
6MTB|1|9|G|617
*
6MTB|1|9|C|624
6MTB|1|9|G|625
6MTB|1|9|G|626
6MTB|1|9|U|627
6MTB|1|9|A|628
6MTB|1|9|A|629
6MTB|1|9|U|630
6MTB|1|9|U|631
6MTB|1|9|C|632

Current chains

Chain 9

18S rRNA

Nearby chains

Chain DD

40S ribosomal protein S3

Chain XX

40S ribosomal protein S23

Chain ee

40S ribosomal protein S30