IL_6MTC_148
3D structure
- PDB id
- 6MTC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- C(UR3)CAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: UR3
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6MTC_148 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.1203
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6MTC|1|5|C|4596
6MTC|1|5|UR3|4597
6MTC|1|5|C|4598
6MTC|1|5|A|4599
6MTC|1|5|G|4600
6MTC|1|5|U|4601
6MTC|1|5|A|4602
6MTC|1|5|C|4603
*
6MTC|1|5|G|4608
6MTC|1|5|G|4609
6MTC|1|5|A|4610
6MTC|1|5|A|4611
6MTC|1|5|C|4612
6MTC|1|5|C|4613
6MTC|1|5|G|4614
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain H
- 60S ribosomal protein L9
- Chain V
- 60S ribosomal protein L23
- Chain m
- 60S ribosomal protein L40
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